MCPcounter
This repository hosts the source code corresponding to the method described in our 2016 paper published in Genome Biology, Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
To install it, the easiest is to use the R package devtools and its function install_github. To do so, open an R session and enter
install.packages(c("devtools","curl")) ##Installs devtools and the MCPcounter dependancy 'curl'
library(devtools)
install_github("ebecht/MCPcounter",ref="master", subdir="Source")
Examples on how to run the algorithm on your data are shown in the documentation ?MCPcounter.estimate
相关推荐
Confidential guide on numerology and astrology, based of GG33 Public information
Advanced software engineer GPT that excels through nailing the basics.
Emulating Dr. Jordan B. Peterson's style in providing life advice and insights.
Your go-to expert in the Rust ecosystem, specializing in precise code interpretation, up-to-date crate version checking, and in-depth source code analysis. I offer accurate, context-aware insights for all your Rust programming questions.
Converts Figma frames into front-end code for various mobile frameworks.
Take an adjectivised noun, and create images making it progressively more adjective!
Embark on a thrilling diplomatic quest across a galaxy on the brink of war. Navigate complex politics and alien cultures to forge peace and avert catastrophe in this immersive interstellar adventure.
Delivers concise Python code and interprets non-English comments
Die All-in-One-Desktop & Docker-AI-Anwendung mit integriertem Lappen, AI-Agenten, No-Code-Agent Builder, MCP-Kompatibilität und vielem mehr.
Fair-Code-Workflow-Automatisierungsplattform mit nativen KI-Funktionen. Kombinieren Sie visuelles Gebäude mit benutzerdefiniertem Code, SelbstHost oder Cloud, 400+ Integrationen.
🧑🚀 全世界最好的 llm 资料总结（数据处理、模型训练、模型部署、 O1 模型、 MCP 、小语言模型、视觉语言模型） | Zusammenfassung der weltbesten LLM -Ressourcen.
Ein leistungsstarkes Neovim -Plugin für die Verwaltung von MCP -Servern (Modellkontextprotokoll)
MCP -Server für den Fetch -Webseiteninhalt mit dem Headless -Browser von Dramatikern.
Brücke zwischen Ollama und MCP -Servern und ermöglicht es lokalen LLMs, Modellkontextprotokoll -Tools zu verwenden
Dieses Repository dient zur Entwicklung des Azure MCP -Servers, wodurch Ihre Agenten die Leistung von Azure verleiht.
Reviews
3
(1)
user_rmDE96mV
2025-04-17
I have been using MCPcounter for my research and it has significantly improved my workflow. The tool is efficient for quantifying the abundance of various immune and stromal cell populations in heterogeneous tissues using transcriptomic data. It's user-friendly, well-documented, and continually updated by its author, ebecht. Highly recommend it to anyone in the field of bioinformatics or immunology. Check it out on GitHub!